Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIA75603.1Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)    
Predicted Functional Partners:
AIA75601.1
Arsenic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.863
AIA75604.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.816
AIA76446.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.810
AIA76715.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.768
AIA75602.1
NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.697
AIA75494.1
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.678
AIA73597.1
Bile acid:sodium symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.669
AIA75599.1
Arsenate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.658
AIA75827.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.645
AIA75600.1
Flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.616
Your Current Organism:
Halomonas campaniensis
NCBI taxonomy Id: 213554
Other names: ATCC BAA-966, DSM 15293, H. campaniensis, Halomonas campaniae, Halomonas campaniensis Romano et al. 2005, Halomonas campisalis subsp. campaniae, strain 5AG
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