Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AIA76417.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)    
Predicted Functional Partners:
AIA76416.1
Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
AIA76418.1
Anticodon nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.953
AIA76420.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.947
AIA74402.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.820
AIA74240.1
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.770
AIA75159.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.700
AIA76419.1
Cell filamentation protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.695
AIA76415.1
DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.650
AIA74405.1
Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.548
AIA74237.1
Type I restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.543
Your Current Organism:
Halomonas campaniensis
NCBI taxonomy Id: 213554
Other names: ATCC BAA-966, DSM 15293, H. campaniensis, Halomonas campaniae, Halomonas campaniensis Romano et al. 2005, Halomonas campisalis subsp. campaniae, strain 5AG
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