STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63204.1RNA ligase, family. (389 aa)    
Predicted Functional Partners:
AKB65804.1
Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.873
AKB63206.1
Inosine-5'-monophosphate dehydrogenase.
       0.781
AKB63202.1
Translation elongation factor 1 alpha-related protein.
       0.747
AKB63207.1
Inosine-5'-monophosphate dehydrogenase.
 
     0.667
AKB63208.1
Inosine-5'-monophosphate dehydrogenase.
 
     0.661
AKB63209.1
Inosine-5'-monophosphate dehydrogenase.
 
     0.645
AKB63349.1
CAAX amino terminal protease family protein.
  
     0.621
AKB63389.1
Thymidylate synthase.
 
     0.601
AKB63319.1
CAAX amino terminal protease family protein.
  
     0.582
AKB65872.1
Archaeal DNA polymerase I.
 
    0.556
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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