Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKB65281.1 | AKB65865.1 | MSMAS_2085 | MSMAS_2669 | Ribonuclease PH. | Putative RNA-processing protein. | 0.958 |
| AKB65281.1 | AKB66272.1 | MSMAS_2085 | MSMAS_3076 | Ribonuclease PH. | rRNA biogenesis protein Nop5/Nop56. | 0.940 |
| AKB65281.1 | csl4 | MSMAS_2085 | MSMAS_2808 | Ribonuclease PH. | Exosome complex RNA-binding protein Csl4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.999 |
| AKB65281.1 | rps11 | MSMAS_2085 | MSMAS_2527 | Ribonuclease PH. | SSU ribosomal protein S14e (S11p); Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.926 |
| AKB65281.1 | rps3ae | MSMAS_2085 | MSMAS_1115 | Ribonuclease PH. | SSU ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family. | 0.630 |
| AKB65281.1 | rps4 | MSMAS_2085 | MSMAS_2528 | Ribonuclease PH. | SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.946 |
| AKB65281.1 | rps6e | MSMAS_2085 | MSMAS_2239 | Ribonuclease PH. | SSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.921 |
| AKB65281.1 | rrp4 | MSMAS_2085 | MSMAS_2086 | Ribonuclease PH. | Putative exosome complex RNA-binding protein 1; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. | 0.999 |
| AKB65281.1 | rrp42 | MSMAS_2085 | MSMAS_2084 | Ribonuclease PH. | Putative exosome complex exonuclease 2; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.999 |
| AKB65281.1 | rtcA | MSMAS_2085 | MSMAS_0017 | Ribonuclease PH. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.957 |
| AKB65865.1 | AKB65281.1 | MSMAS_2669 | MSMAS_2085 | Putative RNA-processing protein. | Ribonuclease PH. | 0.958 |
| AKB65865.1 | AKB66272.1 | MSMAS_2669 | MSMAS_3076 | Putative RNA-processing protein. | rRNA biogenesis protein Nop5/Nop56. | 0.985 |
| AKB65865.1 | csl4 | MSMAS_2669 | MSMAS_2808 | Putative RNA-processing protein. | Exosome complex RNA-binding protein Csl4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.976 |
| AKB65865.1 | rps11 | MSMAS_2669 | MSMAS_2527 | Putative RNA-processing protein. | SSU ribosomal protein S14e (S11p); Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.998 |
| AKB65865.1 | rps3ae | MSMAS_2669 | MSMAS_1115 | Putative RNA-processing protein. | SSU ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family. | 0.963 |
| AKB65865.1 | rps4 | MSMAS_2669 | MSMAS_2528 | Putative RNA-processing protein. | SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
| AKB65865.1 | rps6e | MSMAS_2669 | MSMAS_2239 | Putative RNA-processing protein. | SSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.999 |
| AKB65865.1 | rrp4 | MSMAS_2669 | MSMAS_2086 | Putative RNA-processing protein. | Putative exosome complex RNA-binding protein 1; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. | 0.972 |
| AKB65865.1 | rrp42 | MSMAS_2669 | MSMAS_2084 | Putative RNA-processing protein. | Putative exosome complex exonuclease 2; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.962 |
| AKB65865.1 | rtcA | MSMAS_2669 | MSMAS_0017 | Putative RNA-processing protein. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.959 |
page 1 of 6