STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63224.1Fe-S OXIDOREDUCTASE. (711 aa)    
Predicted Functional Partners:
AKB63225.1
Metallo-beta-lactamase.
  
    0.949
AKB63226.1
Putative deoxyribonuclease YcfH.
       0.875
AKB65375.1
Hypothetical protein.
  
  
 0.769
AKB63228.1
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.601
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
 
 0.416
AKB63988.1
Nitrogenase reductase-like protein.
  
 
 0.416
AKB64814.1
Hypothetical protein.
  
    0.412
AKB64953.1
Hypothetical protein.
  
    0.412
AKB64739.1
Flavodoxin.
     
  0.402
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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