STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63225.1Metallo-beta-lactamase. (213 aa)    
Predicted Functional Partners:
AKB64977.1
Metallo-beta-lactamase family protein.
 
 0.970
AKB64392.1
Metallo-beta-lactamase.
  
  
 
0.908
AKB65593.1
Transcriptional regulator.
    
  0.901
AKB65594.1
Transcriptional regulator.
    
  0.901
AKB63224.1
Fe-S OXIDOREDUCTASE.
  
  
 0.817
AKB63214.1
Hypothetical protein.
   
 0.766
rnj
Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster; An RNase that has 5'-3' exonuclease activity. May be involved in RNA degradation; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Archaeal RNase J subfamily.
     
 0.726
AKB63220.1
FAD/FMN-containing dehydrogenase.
 
  
 0.722
AKB65976.1
Hypothetical protein.
 
 
 0.707
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
   
 
 0.704
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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