Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63247.1Hypothetical protein. (183 aa)    
Predicted Functional Partners:
AKB63246.1
Hypothetical protein.
       0.623
AKB63663.1
Hypothetical protein.
  
     0.603
AKB64783.1
Hypothetical protein.
  
     0.535
AKB66376.1
Acetyltransferase (GNAT) family protein.
  
     0.532
AKB63670.1
Hypothetical protein.
  
     0.528
AKB64227.1
Hypothetical protein.
  
     0.525
AKB63354.1
Hypothetical protein.
  
     0.503
AKB64228.1
Hypothetical protein.
 
      0.502
AKB64124.1
Hypothetical protein.
  
     0.464
AKB64033.1
S-layer family duplication domain protein.
  
     0.463
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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