Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKB64128.1 | AKB64442.1 | MSMAS_0932 | MSMAS_1246 | Prephenate dehydratase. | Shikimate kinase I. | 0.895 |
| AKB64128.1 | AKB65534.1 | MSMAS_0932 | MSMAS_2338 | Prephenate dehydratase. | Chorismate mutase I. | 0.987 |
| AKB64128.1 | aroA-2 | MSMAS_0932 | MSMAS_0075 | Prephenate dehydratase. | 5-Enolpyruvylshikimate-3-phosphate synthase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.922 |
| AKB64128.1 | aroC | MSMAS_0932 | MSMAS_2962 | Prephenate dehydratase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.911 |
| AKB64128.1 | aroD | MSMAS_0932 | MSMAS_0043 | Prephenate dehydratase. | 3-dehydroquinate dehydratase I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.766 |
| AKB64128.1 | aroE | MSMAS_0932 | MSMAS_0042 | Prephenate dehydratase. | Shikimate 5-dehydrogenase I alpha; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.812 |
| AKB64128.1 | hisC | MSMAS_0932 | MSMAS_3258 | Prephenate dehydratase. | Aspartate aminotransferase / Histidinol-phosphate aminotransferase. | 0.987 |
| AKB64442.1 | AKB64128.1 | MSMAS_1246 | MSMAS_0932 | Shikimate kinase I. | Prephenate dehydratase. | 0.895 |
| AKB64442.1 | AKB65503.1 | MSMAS_1246 | MSMAS_2307 | Shikimate kinase I. | Long-chain-fatty-acid--CoA ligase. | 0.670 |
| AKB64442.1 | AKB65534.1 | MSMAS_1246 | MSMAS_2338 | Shikimate kinase I. | Chorismate mutase I. | 0.921 |
| AKB64442.1 | aroA-2 | MSMAS_1246 | MSMAS_0075 | Shikimate kinase I. | 5-Enolpyruvylshikimate-3-phosphate synthase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.995 |
| AKB64442.1 | aroC | MSMAS_1246 | MSMAS_2962 | Shikimate kinase I. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.854 |
| AKB64442.1 | aroD | MSMAS_1246 | MSMAS_0043 | Shikimate kinase I. | 3-dehydroquinate dehydratase I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.836 |
| AKB64442.1 | aroE | MSMAS_1246 | MSMAS_0042 | Shikimate kinase I. | Shikimate 5-dehydrogenase I alpha; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.987 |
| AKB64442.1 | aroK | MSMAS_1246 | MSMAS_2337 | Shikimate kinase I. | Shikimate kinase II. | 0.900 |
| AKB65503.1 | AKB64442.1 | MSMAS_2307 | MSMAS_1246 | Long-chain-fatty-acid--CoA ligase. | Shikimate kinase I. | 0.670 |
| AKB65503.1 | aroA-2 | MSMAS_2307 | MSMAS_0075 | Long-chain-fatty-acid--CoA ligase. | 5-Enolpyruvylshikimate-3-phosphate synthase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.835 |
| AKB65503.1 | aroC | MSMAS_2307 | MSMAS_2962 | Long-chain-fatty-acid--CoA ligase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.691 |
| AKB65534.1 | AKB64128.1 | MSMAS_2338 | MSMAS_0932 | Chorismate mutase I. | Prephenate dehydratase. | 0.987 |
| AKB65534.1 | AKB64442.1 | MSMAS_2338 | MSMAS_1246 | Chorismate mutase I. | Shikimate kinase I. | 0.921 |
page 1 of 4