STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63310.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
AKB64405.1
Membrane protein, putative.
  
    0.762
AKB63999.1
Hypothetical protein.
 
    0.734
AKB63250.1
Zn-ribbon containing protein.
       0.730
AKB65695.1
Hypothetical protein.
 
    0.722
AKB63312.1
CAAX amino terminal protease family protein.
  
    0.637
AKB63349.1
CAAX amino terminal protease family protein.
 
    0.572
AKB63319.1
CAAX amino terminal protease family protein.
 
    0.563
AKB65588.1
Putative cobalt transporter in sulfate-reducing delta-proteobacteria.
   
    0.539
mptA
GTP cyclohydrolase I type 2; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin.
  
    0.529
AKB63569.1
Kef-type transport system 2 (probable substrate potassium), subunit 2.
  
    0.514
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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