STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63313.1Hypothetical protein. (295 aa)    
Predicted Functional Partners:
AKB63312.1
CAAX amino terminal protease family protein.
 
    0.886
AKB64747.1
Hypothetical protein.
 
     0.651
AKB63384.1
Hypothetical protein.
 
     0.633
AKB66222.1
Hypothetical protein.
 
    0.600
AKB63917.1
Hypothetical protein.
  
     0.559
AKB65521.1
Hypothetical protein.
  
    0.553
AKB66121.1
Hypothetical protein.
  
     0.551
AKB63219.1
Archaeosine tRNA-ribosyltransferase type 2.
 
     0.548
AKB63311.1
Hypothetical protein.
       0.544
AKB63319.1
CAAX amino terminal protease family protein.
 
    0.544
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.