STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63319.1CAAX amino terminal protease family protein. (465 aa)    
Predicted Functional Partners:
AKB64033.1
S-layer family duplication domain protein.
  
     0.611
AKB63204.1
RNA ligase, family.
  
     0.582
AKB64892.1
Transcriptional regulator, ArsR family.
 
     0.571
AKB65631.1
Hypothetical protein.
 
     0.570
AKB65804.1
Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
  
     0.564
AKB63310.1
Hypothetical protein.
 
    0.563
AKB65053.1
Transcriptional regulator, ArsR family.
 
     0.550
AKB63313.1
Hypothetical protein.
 
    0.548
AKB63320.1
Hypothetical protein.
 
    0.548
AKB63389.1
Thymidylate synthase.
  
     0.548
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.