STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
AKB63333.1dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (183 aa)    
Predicted Functional Partners:
AKB63331.1
dTDP-4-dehydrorhamnose reductase.
 
 0.999
AKB63332.1
dTDP-glucose 4,6-dehydratase.
 
 0.999
AKB63330.1
Glucose-1-phosphate thymidylyltransferase.
 
 0.987
AKB63368.1
UDP-glucose 6-dehydrogenase.
  
  
 0.941
AKB65671.1
Glucose-1-phosphate thymidylyltransferase.
  
 0.901
AKB63323.1
Glycosyltransferase.
 
  
 0.787
hisI
Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
     
 0.757
AKB63314.1
UDP-glucose 4-epimerase.
  
 
 0.685
AKB63849.1
Mannose-1-phosphate guanylyltransferase (GDP); Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.643
AKB63337.1
dTDP-glucose 4,6-dehydratase.
  
 
 0.616
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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