STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63349.1CAAX amino terminal protease family protein. (285 aa)    
Predicted Functional Partners:
AKB63350.1
Hypothetical protein.
 
    0.883
AKB63204.1
RNA ligase, family.
  
     0.621
AKB65804.1
Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
  
     0.610
AKB63310.1
Hypothetical protein.
 
    0.587
AKB65053.1
Transcriptional regulator, ArsR family.
 
   
 0.578
AKB66404.1
Hypothetical protein.
  
  
 0.577
AKB64892.1
Transcriptional regulator, ArsR family.
 
   
 0.565
AKB64033.1
S-layer family duplication domain protein.
  
     0.552
AKB64405.1
Membrane protein, putative.
  
    0.543
AKB65631.1
Hypothetical protein.
 
     0.541
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.