Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63378.1Hypothetical protein. (531 aa)    
Predicted Functional Partners:
AKB63345.1
UDP-glucose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.808
AKB63371.1
Hypothetical protein.
 
 
 0.542
AKB63344.1
Hypothetical protein.
 
 
 0.536
AKB65765.1
Polysaccharide deacetylase.
 
 
 0.533
AKB63857.1
Glycosyltransferase.
 
 
 0.516
AKB63314.1
UDP-glucose 4-epimerase.
 
 
 0.513
AKB63348.1
Acetyltransferase.
 
  
 0.508
AKB63366.1
UDP-glucose 4-epimerase.
 
 
 0.507
AKB65665.1
Glycosyltransferase.
 
 
 0.507
AKB63362.1
Glycosyltransferase.
 
 
 0.488
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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