Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63384.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
AKB65762.1
Hypothetical protein.
 
     0.634
AKB63313.1
Hypothetical protein.
 
     0.632
AKB63350.1
Hypothetical protein.
 
     0.625
AKB63320.1
Hypothetical protein.
 
     0.624
AKB63478.1
Hypothetical protein.
 
     0.605
AKB66222.1
Hypothetical protein.
  
     0.563
AKB63861.1
Hypothetical protein.
  
     0.534
mfnB
Duf556 family protein; Catalyzes the formation of 4-(hydroxymethyl)-2- furancarboxaldehyde phosphate (4-HFC-P) from two molecules of glyceraldehyde-3-P (GA-3-P).
       0.526
AKB66121.1
Hypothetical protein.
  
     0.499
AKB63319.1
CAAX amino terminal protease family protein.
 
     0.465
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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