STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63393.1Phosphoserine phosphatase. (285 aa)    
Predicted Functional Partners:
AKB63219.1
Archaeosine tRNA-ribosyltransferase type 2.
 
  
 0.887
AKB63392.1
Phosphoserine phosphatase.
    
 0.874
AKB66123.1
Glycerol dehydrogenase.
 
     0.750
AKB64203.1
Replication protein A (two OB fold, one zinc finger).
 
     0.748
AKB64204.1
Hypothetical protein.
  
     0.747
AKB65271.1
Mov34 family protein.
  
     0.747
AKB64055.1
HTH DNA-binding protein.
 
     0.735
AKB65728.1
Hypothetical protein.
  
     0.723
rpl44e
LSU ribosomal protein L44e; Binds to the 23S rRNA.
  
     0.723
AKB63592.1
Hypothetical protein.
  
     0.718
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.