STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63396.1Digeranylgeranylglyceryl phosphate synthase. (313 aa)    
Predicted Functional Partners:
ubiX
UbiX family decarboxylase associated with menaquinone via futalosine; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
  
  
  0.918
AKB63395.1
Geranylgeranyl/isoprenyl reductase.
 
     0.801
AKB63709.1
Geranylfarnesyl diphosphate synthetase; Belongs to the FPP/GGPP synthase family.
     
  0.800
AKB63394.1
Radical SAM domain protein.
 
     0.633
AKB66313.1
Hypothetical protein.
  
     0.561
AKB64123.1
Hypothetical protein.
  
     0.513
AKB66299.1
Polyferredoxin protein MvhB.
  
     0.505
AKB66312.1
Hypothetical protein.
  
     0.504
AKB64124.1
Hypothetical protein.
  
     0.502
tgtA
Archaeosine tRNA-ribosyltransferase type 1; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
       0.501
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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