STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63402.1Iron-sulfur-binding protein. (177 aa)    
Predicted Functional Partners:
AKB64552.1
Iron-sulfur cluster binding protein.
  
 
 0.922
AKB65412.1
Hypothetical protein.
  
 
 0.737
AKB65572.1
Energy-conserving hydrogenase (ferredoxin), subunit F.
  
 
 0.737
AKB64012.1
Ferredoxin.
  
 
 0.681
AKB64013.1
Ferredoxin.
  
 
 0.681
AKB64704.1
Ketoisovalerate oxidoreductase subunit VorC.
  
 
 0.681
AKB63403.1
Putative transcriptional regulator.
       0.619
AKB65601.1
Cell surface protein.
 
  
 0.548
AKB64135.1
Hypothetical protein.
 
  
 0.525
AKB64339.1
Hypothetical protein.
 
  
 0.524
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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