STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63409.1Iron-sulfur cluster assembly protein SufB. (407 aa)    
Predicted Functional Partners:
AKB63410.1
Iron-sulfur cluster assembly ATPase protein SufC.
 0.999
AKB65827.1
Iron-sulfur cluster assembly ATPase protein SufC.
 0.993
AKB66347.1
Cysteine desulfurase.
 
 0.970
AKB64417.1
Scaffold protein.
  
 
 0.793
AKB65924.1
Scaffold protein.
  
 
 0.793
AKB65861.1
Putative iron binding protein from the HesB_IscA_SufA family.
  
 
 0.492
iscS
Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
 
 0.474
AKB65923.1
Homocysteine desulfhydrase.
  
 
 0.474
tatC-2
Twin-arginine translocation protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
     
 0.472
AKB65872.1
Archaeal DNA polymerase I.
     
 0.456
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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