Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB63414.1Undecaprenyl diphosphate synthase. (224 aa)    
Predicted Functional Partners:
AKB66108.1
Geranylfarnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.980
AKB64505.1
Undecaprenyl diphosphate synthase.
  
  
  0.934
AKB63415.1
GTP-binding and nucleic acid-binding protein YchF.
  
    0.894
AKB63413.1
Hypothetical protein.
  
  
 0.813
AKB63709.1
Geranylfarnesyl diphosphate synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.771
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
 
 0.646
AKB64868.1
Sterol-regulatory element-binding protein intramembrane protease.
 
  
 0.574
rps10
SSU ribosomal protein S20e (S10p); Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
 
  
 0.573
glmM
Phosphomannomutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.565
nusA
Transcription elongation factor NusA-like protein; Participates in transcription termination. Belongs to the NusA family.
  
    0.548
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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