STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63436.1Hydrogenase, HycC subunit, putative. (643 aa)    
Predicted Functional Partners:
AKB63432.1
Hydrogenase, group 4, HycE subunit, putative.
 
 0.999
AKB63435.1
Formate hydrogenlyase subunit 4.
 
 0.992
AKB63431.1
Hydrogenase, group 4, HycG subunit, putative.
 
 0.990
AKB65410.1
NADH-quinone oxidoreductase subunit C/D.
 
 
 0.984
AKB63434.1
Hydrogenase-4 component E.
 
 
 0.982
AKB65409.1
NADH-quinone oxidoreductase subunit C/D.
   
 0.982
AKB65577.1
Energy-conserving hydrogenase (ferredoxin), subunit A.
 
0.955
AKB63433.1
Hydrogenase-4 component F.
 
  
 
0.953
AKB65416.1
NADH:ubiquinone oxidoreductase subunit L.
 
0.949
AKB65576.1
Energy-conserving hydrogenase (ferredoxin), subunit B.
 
 0.934
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.