Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKB63438.1ABC transporter, ATP-binding protein. (303 aa)    
Predicted Functional Partners:
AKB63439.1
ABC-type Na+ efflux pump, permease component.
 
 
 0.978
AKB65451.1
Hypothetical protein.
  
 0.734
AKB65332.1
ABC transporter, ATP-binding protein.
    
 0.669
AKB64743.1
Multidrug ABC transporter, permease protein.
 
 
 0.591
AKB65442.1
ABC transporter, permease protein.
 
 
 0.586
AKB65883.1
ABC transporter, permease protein.
 
 
 0.581
AKB63437.1
5-amino-6-(5-phosphoribosylamino)uracil reductase.
       0.550
AKB63546.1
ABC transporter, permease protein.
  
 
 0.525
AKB64656.1
ABC transporter, permease protein.
  
 
 0.525
AKB65601.1
Cell surface protein.
  
 
 0.495
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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