STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63441.1Surface layer protein B. (637 aa)    
Predicted Functional Partners:
AKB63440.1
Corrinoid methyltransferase protein.
       0.778
AKB65225.1
Hypothetical protein.
  
     0.596
AKB65236.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
  
     0.542
AKB63638.1
Hypothetical protein.
  
     0.535
AKB64637.1
Hypothetical protein.
  
     0.528
AKB63354.1
Hypothetical protein.
  
     0.515
AKB63723.1
Chromosome segregation ATPase.
  
     0.497
AKB65686.1
Hypothetical protein.
  
     0.487
AKB64414.1
Hypothetical protein.
  
     0.486
AKB66237.1
Hypothetical protein.
  
     0.486
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.