STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63467.1Segregation and condensation protein B. (371 aa)    
Predicted Functional Partners:
AKB63466.1
Segregation and condensation protein A.
 
 
 0.997
smc
Chromosome partition protein smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.951
AKB63464.1
Hypothetical protein.
       0.700
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
  
 0.537
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
     
 0.520
AKB64283.1
Single-stranded-DNA-specific exonuclease RecJ.
 
    0.487
AKB64312.1
DNA topoisomerase I.
  
  
 0.465
AKB63681.1
Small primase-like proteins (Toprim domain); Belongs to the UPF0292 family.
  
    0.448
AKB65907.1
Single-stranded-DNA-specific exonuclease RecJ.
 
    0.443
rps8e
SSU ribosomal protein S8e.
       0.423
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.