Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63472.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
AKB65223.1
Hypothetical protein.
  
     0.594
AKB66220.1
Hypothetical protein.
 
     0.565
AKB65225.1
Hypothetical protein.
  
     0.505
AKB66237.1
Hypothetical protein.
  
     0.503
AKB64287.1
Hypothetical protein.
  
     0.492
AKB63473.1
Outer membrane lipoprotein receptor.
       0.490
AKB65259.1
Hypothetical protein.
  
     0.452
rad50
DNA double-strand break repair Rad50 ATPase; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily.
 
     0.439
AKB66078.1
Hypothetical protein.
  
     0.438
AKB65236.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
  
     0.427
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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