Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63481.1Radical SAM domain protein. (377 aa)    
Predicted Functional Partners:
AKB66389.1
moaA/nifB/pqqE family protein.
 
     0.712
rpl12
LSU ribosomal protein L12a (P1/P2); Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family.
       0.500
AKB66136.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.499
AKB66143.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.499
AKB65131.1
Molybdopterin-guanine dinucleotide biosynthesis protein MobB.
 
 
 0.469
AKB66144.1
Heme biosynthesis protein related to NirD and NirG.
 
 
 0.463
AKB66137.1
Heme biosynthesis protein related to NirD and NirG.
 
 
 0.461
AKB65510.1
Hypothetical protein.
 
 
 0.443
rpl1
LSU ribosomal protein L10Ae (L1p); Binds directly to 23S rRNA. Probably involved in E site tRNA release.
     
 0.432
AKB64282.1
Hypothetical protein.
 
  
 0.430
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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