STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63481.1Radical SAM domain protein. (377 aa)    
Predicted Functional Partners:
AKB66389.1
moaA/nifB/pqqE family protein.
 
     0.708
AKB66136.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.524
AKB66143.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.524
AKB66144.1
Heme biosynthesis protein related to NirD and NirG.
 
 
 0.515
AKB66137.1
Heme biosynthesis protein related to NirD and NirG.
 
 
 0.513
AKB65131.1
Molybdopterin-guanine dinucleotide biosynthesis protein MobB.
 
 
 0.482
AKB65510.1
Hypothetical protein.
 
 
 0.480
rpl12
LSU ribosomal protein L12a (P1/P2); Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family.
       0.462
AKB63788.1
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN.
  
 
 0.422
AKB63789.1
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE; Belongs to the NifD/NifK/NifE/NifN family.
  
 
 0.422
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.