STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63493.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
AKB63820.1
NMD protein affecting ribosome stability and mRNA decay.
 
     0.745
rpl40e
LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
 
     0.738
mptD
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).
 
     0.707
AKB63219.1
Archaeosine tRNA-ribosyltransferase type 2.
  
     0.694
rpl44e
LSU ribosomal protein L44e; Binds to the 23S rRNA.
 
     0.669
AKB63917.1
Hypothetical protein.
 
     0.661
AKB63629.1
Hypothetical protein.
  
     0.633
AKB66190.1
Signal peptidase, type IV - prepilin/preflagellin.
 
     0.622
AKB66123.1
Glycerol dehydrogenase.
 
     0.616
AKB66124.1
Replication factor-A protein 1.
  
     0.614
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.