Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB63506.1HTH DNA-binding protein. (86 aa)    
Predicted Functional Partners:
AKB63505.1
Cytosolic Fe-S cluster assembling factor NBP35; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
    0.837
AKB63507.1
Hypothetical protein.
 
  
 0.795
AKB63590.1
Methyl coenzyme M reductase system component A2.
  
    0.779
AKB63509.1
Ferredoxin.
 
     0.692
AKB63508.1
Putative transcriptional regulator.
 
  
 0.684
AKB63510.1
Hypothetical protein.
 
     0.672
AKB63504.1
Putative thiol:disulfide oxidoreductase involved in cytochrome C-type biogenesis.
 
     0.490
AKB65440.1
Dipeptide transport ATP-binding protein DppD; TCDB 3.A.1.5.2.
 
    0.451
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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