STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63530.1Coenzyme F420 hydrogenase subunit beta. (344 aa)    
Predicted Functional Partners:
AKB64843.1
Coenzyme F420 hydrogenase subunit gamma.
 
 0.992
AKB63531.1
Glutamate synthase [NADPH] putative GlxC chain.
 
    0.988
AKB64841.1
Coenzyme F420 hydrogenase subunit alpha.
 
 0.977
AKB64842.1
Hydrogenase 1 maturation protease.
 
 
 0.950
AKB63532.1
Glutamate synthase [NADPH] large chain; Belongs to the glutamate synthase family.
 
    0.948
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
 
 
 0.948
mtd
F420-dependent methylenetetrahydromethanopterin dehydrogenase; Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.
  
 
 0.938
AKB64844.1
Coenzyme F420 hydrogenase subunit beta.
  
  
0.932
AKB63533.1
Glutamine amidotransferase, class-II.
 
    0.931
AKB63283.1
Coenzyme F420 hydrogenase subunit beta.
  
  
 
0.913
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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