STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63545.1ABC transporter, ATP-binding protein. (329 aa)    
Predicted Functional Partners:
AKB63546.1
ABC transporter, permease protein.
 
 
 0.969
AKB64743.1
Multidrug ABC transporter, permease protein.
 
 
 0.870
AKB65442.1
ABC transporter, permease protein.
 
 
 0.866
AKB65883.1
ABC transporter, permease protein.
 
 
 0.865
AKB64656.1
ABC transporter, permease protein.
 
 
 0.862
AKB65451.1
Hypothetical protein.
  
 0.857
AKB65601.1
Cell surface protein.
  
 0.784
AKB65332.1
ABC transporter, ATP-binding protein.
 
  
0.743
AKB63714.1
V-type ATP synthase subunit K.
   
 0.582
AKB66024.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
   
0.460
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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