Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63561.1Ferredoxin. (542 aa)    
Predicted Functional Partners:
AKB63425.1
Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family.
 
     0.771
AKB63427.1
Methylcobalamin:coenzyme M methyltransferase, methanol-specific.
 
   
 0.738
AKB64321.1
Methylcobalamin:coenzyme M methyltransferase, methanol-specific.
 
   
 0.727
AKB65901.1
Hypothetical protein.
 
     0.726
AKB63423.1
Methanol:corrinoid methyltransferase.
 
   
 0.714
AKB66219.1
Methanol:corrinoid methyltransferase.
 
   
 0.714
AKB64322.1
Methanol:corrinoid methyltransferase.
 
   
 0.712
AKB63997.1
Methylcobamide:CoM methyltransferase MtaA.
 
   
 0.709
AKB65948.1
Methylcobamide:CoM methyltransferase MtaA.
 
   
 0.702
AKB65469.1
Methylcobalamin:coenzyme M methyltransferase, methanol-specific.
 
   
 0.701
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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