STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63578.1Agmatinase; Belongs to the arginase family. (291 aa)    
Predicted Functional Partners:
pdaD
Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
 
  
 0.972
pdaD-2
Pyruvoyl-dependent arginine decarboxylase 2; Belongs to the PdaD family.
 
  
 0.965
AKB64701.1
Ornithine decarboxylase.
  
 
 0.964
eif5a
Eukaryotic translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
  
  
 0.926
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 0.899
argH
Argininosuccinate lyase.
    
 0.847
AKB64383.1
Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
   
 0.811
AKB66336.1
Citrate synthase (si).
  
 
 0.807
AKB66335.1
Aconitate hydratase.
    
 0.793
AKB63631.1
Beta-ketoacyl synthase/thiolase.
    
 0.784
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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