STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63583.1Alkylhydroperoxidase AhpD family core domain protein. (165 aa)    
Predicted Functional Partners:
AKB63585.1
Putative methanogenesis marker protein 17.
 
     0.849
AKB63588.1
Putative methanogenesis marker protein 6.
 
     0.843
AKB63584.1
Putative methanogenesis marker protein 7.
 
     0.825
AKB63587.1
Putative methanogenesis marker protein 5.
 
    0.810
AKB63586.1
Hypothetical protein.
 
   
 0.760
AKB63589.1
Putative methanogenesis marker protein 3; Belongs to the UPF0288 family.
 
     0.752
AKB63590.1
Methyl coenzyme M reductase system component A2.
 
     0.697
AKB63266.1
Methyl coenzyme M reductase operon protein D.
  
     0.681
AKB63861.1
Hypothetical protein.
  
     0.673
AKB63986.1
UDP-N-acetylmuramoylalanine--D-glutamate ligase.
 
    0.669
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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