STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63586.1Hypothetical protein. (415 aa)    
Predicted Functional Partners:
AKB63587.1
Putative methanogenesis marker protein 5.
 
    0.952
AKB63584.1
Putative methanogenesis marker protein 7.
 
     0.949
AKB63588.1
Putative methanogenesis marker protein 6.
 
     0.947
AKB63585.1
Putative methanogenesis marker protein 17.
 
     0.934
AKB63589.1
Putative methanogenesis marker protein 3; Belongs to the UPF0288 family.
 
     0.855
AKB63590.1
Methyl coenzyme M reductase system component A2.
 
     0.840
AKB63267.1
Methyl coenzyme M reductase operon protein C.
 
     0.765
AKB63583.1
Alkylhydroperoxidase AhpD family core domain protein.
 
   
 0.760
AKB63265.1
Methyl coenzyme M reductase beta subunit.
 
     0.749
AKB63269.1
Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.
 
     0.748
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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