STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63637.1Glucoamylase. (658 aa)    
Predicted Functional Partners:
AKB63640.1
Alpha-amylase.
 
 
 0.872
AKB63639.1
Alpha-amylase.
 
 
 0.865
AKB63638.1
Hypothetical protein.
 
     0.847
AKB64342.1
Malto-oligosyltrehalose trehalohydrolase.
 
  
 0.736
AKB65859.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
 
  
 0.701
AKB65152.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
 
  
 0.700
fni
Isopentenyl-diphosphate delta-isomerase, FMN-dependent; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
    
  0.586
AKB64341.1
Hypothetical protein.
 
  
 0.566
AKB64846.1
Glycogen debranching enzyme.
 
  
 0.563
AKB64986.1
Inner membrane protein YihY, formerly thought to be RNase BN.
    
  0.551
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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