STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63638.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
AKB63637.1
Glucoamylase.
 
     0.847
AKB65223.1
Hypothetical protein.
  
     0.674
AKB65225.1
Hypothetical protein.
  
     0.674
AKB63354.1
Hypothetical protein.
  
     0.662
AKB66237.1
Hypothetical protein.
  
     0.662
AKB66020.1
Hypothetical protein.
  
     0.654
AKB63639.1
Alpha-amylase.
       0.642
AKB63640.1
Alpha-amylase.
       0.642
AKB64637.1
Hypothetical protein.
  
     0.621
AKB65236.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
  
     0.615
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.