Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63639.1Alpha-amylase. (398 aa)    
Predicted Functional Partners:
AKB63640.1
Alpha-amylase.
 
  
 
0.995
AKB64769.1
Glycogen phosphorylase.
 
 
 0.974
AKB63637.1
Glucoamylase.
 
 
 0.934
AKB63638.1
Hypothetical protein.
       0.828
AKB65859.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
 
 
 0.790
AKB65152.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
 
 
 0.789
AKB63918.1
Hypothetical protein.
 
  
 0.670
AKB65662.1
Glucoamylase.
 
 
 0.669
AKB63920.1
Glycosyltransferase.
 
     0.589
AKB63919.1
Galactose-1-phosphate uridylyltransferase.
       0.527
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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