Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AKB63649.1Deoxyribodipyrimidine photolyase, type II. (462 aa)    
Predicted Functional Partners:
AKB65473.1
Superoxide dismutase (Mn/Fe); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.772
AKB63538.1
Benzodiazepine receptor TspO.
 
  
 0.705
AKB63220.1
FAD/FMN-containing dehydrogenase.
  
 
 0.622
AKB63688.1
FIG143828: Hypothetical protein YbgA.
 
  
 0.608
infB
Translation initiation factor 2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
    
   0.592
AKB65976.1
Hypothetical protein.
 
 
 
 0.552
AKB64146.1
Hypothetical protein.
 
 
 
 0.548
AKB64977.1
Metallo-beta-lactamase family protein.
 
 
 
 0.541
AKB64905.1
Hypothetical protein.
  
     0.521
AKB64774.1
Secreted and surface protein containing fasciclin-like repeats.
 
  
 0.510
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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