STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63664.1Aldehyde dehydrogenase. (479 aa)    
Predicted Functional Partners:
AKB64477.1
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 0.805
AKB64393.1
Ferredoxin oxidoreductase.
  
   
 0.789
AKB64705.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
  
 0.786
AKB66128.1
Fumarylacetoacetate hydrolase family protein.
  
 0.763
AKB63657.1
Coenzyme F390 synthetase.
  
 0.744
AKB63833.1
Phenylacetate-coenzyme A ligase.
  
 0.744
AKB64831.1
CapK protein, putative.
  
 0.744
AKB65046.1
Phenylacetate-coenzyme A ligase.
  
 0.744
AKB65264.1
Phenylacetate-coenzyme A ligase.
  
 0.744
AKB65153.1
Alcohol dehydrogenase.
 
 0.742
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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