STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63666.1Phytoene dehydrogenase. (443 aa)    
Predicted Functional Partners:
AKB63663.1
Hypothetical protein.
 
    0.904
AKB65873.1
ChlD component of cobalt chelatase involved in B12 biosynthesis.
 
 
 0.840
AKB64890.1
Hypothetical protein.
  
 
 0.767
AKB66421.1
Methylcobalamin:coenzyme M methyltransferase, methylamine-specific.
 
 
 0.764
AKB65948.1
Methylcobamide:CoM methyltransferase MtaA.
 
 
 0.763
AKB63427.1
Methylcobalamin:coenzyme M methyltransferase, methanol-specific.
 
 
 0.757
AKB63670.1
Hypothetical protein.
 
     0.757
AKB65469.1
Methylcobalamin:coenzyme M methyltransferase, methanol-specific.
 
 
 0.757
AKB63997.1
Methylcobamide:CoM methyltransferase MtaA.
  
 
 0.724
AKB64321.1
Methylcobalamin:coenzyme M methyltransferase, methanol-specific.
  
 
 0.724
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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