STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63677.1Inosine-5'-monophosphate dehydrogenase. (283 aa)    
Predicted Functional Partners:
AKB63678.1
Universal stress protein.
  
    0.925
AKB63679.1
Pyrimidine deaminase archaeal predicted.
  
    0.893
AKB63676.1
5-amino-6-(5-phosphoribosylamino)uracil reductase.
  
  
 0.881
rpl2
LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
 
 0.876
rpl44e
LSU ribosomal protein L44e; Binds to the 23S rRNA.
 
 
   0.701
AKB65386.1
Putative Zn-ribbon RNA-binding protein with a function in translation.
  
 
   0.699
AKB63209.1
Inosine-5'-monophosphate dehydrogenase.
 
 
   0.673
rpl18a
LSU ribosomal protein L18Ae.
  
 
   0.670
rpl39e
LSU ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
 
   0.664
rpl30
LSU ribosomal protein L7e (L30p).
 
 
 0.662
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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