STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63680.1Hypothetical protein; Belongs to the UPF0235 family. (105 aa)    
Predicted Functional Partners:
AKB63681.1
Small primase-like proteins (Toprim domain); Belongs to the UPF0292 family.
 
     0.869
AKB65134.1
OB-fold nucleic acid binding domain protein.
  
     0.667
AKB63914.1
Hypothetical protein.
  
     0.600
sepS
O-phosphoseryl-tRNA(Cys) synthetase; Catalyzes the attachment of O-phosphoserine (Sep) to tRNA(Cys).
 
     0.593
trmY
Protein of unknown function DUF358; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
 
     0.571
AKB66495.1
Putative transcriptional regulator with an HTH domain protein.
  
     0.570
AKB66471.1
Glycyl-tRNA synthetase.
 
     0.563
AKB65849.1
Hydrogenase expression/formation protein.
  
     0.562
AKB65250.1
Hypothetical protein.
  
     0.545
AKB64252.1
Riboflavin synthase archaeal.
 
     0.521
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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