STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63689.1Hypothetical protein. (363 aa)    
Predicted Functional Partners:
AKB63688.1
FIG143828: Hypothetical protein YbgA.
  
    0.700
AKB64825.1
Hypothetical protein.
  
     0.563
AKB66333.1
Hypothetical protein.
  
     0.562
AKB65079.1
Hypothetical protein.
  
     0.550
AKB64414.1
Hypothetical protein.
  
     0.488
AKB64568.1
Hypothetical protein.
  
     0.478
AKB66237.1
Hypothetical protein.
  
     0.477
AKB63763.1
Hypothetical protein.
  
     0.475
AKB65662.1
Glucoamylase.
  
    0.470
AKB65837.1
Archaeosine tRNA-ribosyltransferase type 2 short.
  
     0.470
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.