STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63706.1Endonuclease III. (145 aa)    
Predicted Functional Partners:
AKB63705.1
ADP-ribosylglycohydrolase.
 
     0.772
AKB63225.1
Metallo-beta-lactamase.
 
     0.592
AKB63586.1
Hypothetical protein.
 
     0.577
AKB63585.1
Putative methanogenesis marker protein 17.
 
     0.575
AKB63587.1
Putative methanogenesis marker protein 5.
 
     0.566
AKB63584.1
Putative methanogenesis marker protein 7.
 
     0.560
AKB63707.1
Metallo-beta-lactamase family protein.
 
     0.542
AKB63588.1
Putative methanogenesis marker protein 6.
 
     0.458
AKB63557.1
(S)-3-O-geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
       0.423
AKB63589.1
Putative methanogenesis marker protein 3; Belongs to the UPF0288 family.
       0.408
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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