AKB63763.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB63763.1

Hypothetical protein. (148 aa)

Predicted Functional Partners:

AKB63762.1

0.621

queC

0.482

AKB63689.1

0.475

glyA

0.446

AKB63777.1

0.421

AKB63760.1

0.420

AKB63675.1

0.416

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63675.1	AKB63763.1	MSMAS_0479	MSMAS_0567	Hypothetical protein.	Hypothetical protein.	0.416
AKB63689.1	AKB63763.1	MSMAS_0493	MSMAS_0567	Hypothetical protein.	Hypothetical protein.	0.475
AKB63760.1	AKB63763.1	MSMAS_0564	MSMAS_0567	Hypothetical protein.	Hypothetical protein.	0.420
AKB63760.1	queC	MSMAS_0564	MSMAS_0565	Hypothetical protein.	Queuosine Biosynthesis QueC ATPase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	0.933
AKB63762.1	AKB63763.1	MSMAS_0566	MSMAS_0567	Phosphodiesterase.	Hypothetical protein.	0.621
AKB63762.1	queC	MSMAS_0566	MSMAS_0565	Phosphodiesterase.	Queuosine Biosynthesis QueC ATPase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	0.527
AKB63763.1	AKB63675.1	MSMAS_0567	MSMAS_0479	Hypothetical protein.	Hypothetical protein.	0.416
AKB63763.1	AKB63689.1	MSMAS_0567	MSMAS_0493	Hypothetical protein.	Hypothetical protein.	0.475
AKB63763.1	AKB63760.1	MSMAS_0567	MSMAS_0564	Hypothetical protein.	Hypothetical protein.	0.420
AKB63763.1	AKB63762.1	MSMAS_0567	MSMAS_0566	Hypothetical protein.	Phosphodiesterase.	0.621
AKB63763.1	AKB63777.1	MSMAS_0567	MSMAS_0581	Hypothetical protein.	Transporter.	0.421
AKB63763.1	glyA	MSMAS_0567	MSMAS_0861	Hypothetical protein.	Serine hydroxymethyltransferase / L-threonine aldolase / L-allo-threonine aldolase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.	0.446
AKB63763.1	queC	MSMAS_0567	MSMAS_0565	Hypothetical protein.	Queuosine Biosynthesis QueC ATPase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	0.482
AKB63777.1	AKB63763.1	MSMAS_0581	MSMAS_0567	Transporter.	Hypothetical protein.	0.421
glyA	AKB63763.1	MSMAS_0861	MSMAS_0567	Serine hydroxymethyltransferase / L-threonine aldolase / L-allo-threonine aldolase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.	Hypothetical protein.	0.446
queC	AKB63760.1	MSMAS_0565	MSMAS_0564	Queuosine Biosynthesis QueC ATPase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	Hypothetical protein.	0.933
queC	AKB63762.1	MSMAS_0565	MSMAS_0566	Queuosine Biosynthesis QueC ATPase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	Phosphodiesterase.	0.527
queC	AKB63763.1	MSMAS_0565	MSMAS_0567	Queuosine Biosynthesis QueC ATPase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	Hypothetical protein.	0.482