Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AKB63766.1Threonine dehydrogenase and related Zn-dependent dehydrogenase. (446 aa)    
Predicted Functional Partners:
AKB66053.1
Ferredoxin.
  
  
  0.911
fae-hps
Formaldehyde activating enzyme; Catalyzes the condensation of formaldehyde with tetrahydromethanopterin (H(4)MPT) to 5,10- methylenetetrahydromethanopterin; In the N-terminal section; belongs to the formaldehyde- activating enzyme family.
    
 0.907
AKB65898.1
Formylmethanofuran dehydrogenase subunit C.
    
 0.901
AKB66261.1
Hypothetical protein.
    
  0.901
AKB66297.1
Formylmethanofuran dehydrogenase (molybdenum) subunit C.
    
 0.901
AKB66300.1
FmdE, Molybdenum formylmethanofuran dehydrogenase operon.
    
  0.901
AKB64464.1
Formylmethanofuran dehydrogenase subunit D.
     
  0.900
AKB64465.1
Formylmethanofuran dehydrogenase subunit B.
     
  0.900
AKB64466.1
Tungsten-containing formylmethanofuran dehydrogenase 2 subunit G.
     
  0.900
AKB64469.1
Polyferredoxin protein MvhB.
     
  0.900
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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