Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKB63815.1 | AKB63820.1 | MSMAS_0619 | MSMAS_0624 | Universal archaeal KH-domain/beta-lactamase-domain protein. | NMD protein affecting ribosome stability and mRNA decay. | 0.478 |
| AKB63815.1 | AKB64439.1 | MSMAS_0619 | MSMAS_1243 | Universal archaeal KH-domain/beta-lactamase-domain protein. | AMP phosphohydrolase; Catalyzes the conversion of AMP and phosphate to adenine and ribose 1,5-bisphosphate (R15P). Exhibits phosphorylase activity toward CMP and UMP in addition to AMP. Functions in an archaeal AMP degradation pathway, together with R15P isomerase and RubisCO. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily. | 0.424 |
| AKB63815.1 | dnaG | MSMAS_0619 | MSMAS_0020 | Universal archaeal KH-domain/beta-lactamase-domain protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | 0.442 |
| AKB63815.1 | psmB | MSMAS_0619 | MSMAS_0620 | Universal archaeal KH-domain/beta-lactamase-domain protein. | Proteasome subunit beta, archaeal; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.700 |
| AKB63815.1 | rnj | MSMAS_0619 | MSMAS_2913 | Universal archaeal KH-domain/beta-lactamase-domain protein. | Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster; An RNase that has 5'-3' exonuclease activity. May be involved in RNA degradation; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Archaeal RNase J subfamily. | 0.418 |
| AKB63815.1 | rpl18e | MSMAS_0619 | MSMAS_2923 | Universal archaeal KH-domain/beta-lactamase-domain protein. | LSU ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family. | 0.400 |
| AKB63815.1 | rpl7ae | MSMAS_0619 | MSMAS_2234 | Universal archaeal KH-domain/beta-lactamase-domain protein. | LSU ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.424 |
| AKB63815.1 | rps8e | MSMAS_0619 | MSMAS_2645 | Universal archaeal KH-domain/beta-lactamase-domain protein. | SSU ribosomal protein S8e. | 0.408 |
| AKB63815.1 | spt5 | MSMAS_0619 | MSMAS_0290 | Universal archaeal KH-domain/beta-lactamase-domain protein. | Putative transcription antitermination protein NusG; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. | 0.432 |
| AKB63820.1 | AKB63815.1 | MSMAS_0624 | MSMAS_0619 | NMD protein affecting ribosome stability and mRNA decay. | Universal archaeal KH-domain/beta-lactamase-domain protein. | 0.478 |
| AKB63820.1 | dnaG | MSMAS_0624 | MSMAS_0020 | NMD protein affecting ribosome stability and mRNA decay. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | 0.509 |
| AKB63820.1 | rpl18e | MSMAS_0624 | MSMAS_2923 | NMD protein affecting ribosome stability and mRNA decay. | LSU ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family. | 0.889 |
| AKB63820.1 | rpl7ae | MSMAS_0624 | MSMAS_2234 | NMD protein affecting ribosome stability and mRNA decay. | LSU ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.893 |
| AKB63820.1 | rps8e | MSMAS_0624 | MSMAS_2645 | NMD protein affecting ribosome stability and mRNA decay. | SSU ribosomal protein S8e. | 0.960 |
| AKB64439.1 | AKB63815.1 | MSMAS_1243 | MSMAS_0619 | AMP phosphohydrolase; Catalyzes the conversion of AMP and phosphate to adenine and ribose 1,5-bisphosphate (R15P). Exhibits phosphorylase activity toward CMP and UMP in addition to AMP. Functions in an archaeal AMP degradation pathway, together with R15P isomerase and RubisCO. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily. | Universal archaeal KH-domain/beta-lactamase-domain protein. | 0.424 |
| dnaG | AKB63815.1 | MSMAS_0020 | MSMAS_0619 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | Universal archaeal KH-domain/beta-lactamase-domain protein. | 0.442 |
| dnaG | AKB63820.1 | MSMAS_0020 | MSMAS_0624 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | NMD protein affecting ribosome stability and mRNA decay. | 0.509 |
| dnaG | rpl18e | MSMAS_0020 | MSMAS_2923 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | LSU ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family. | 0.755 |
| dnaG | rpl7ae | MSMAS_0020 | MSMAS_2234 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | LSU ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.478 |
| dnaG | rps8e | MSMAS_0020 | MSMAS_2645 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | SSU ribosomal protein S8e. | 0.595 |
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