AKB63850.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB63850.1

Hypothetical protein. (494 aa)

Predicted Functional Partners:

AKB63368.1

0.767

AKB63330.1

0.702

AKB63849.1

0.634

AKB63470.1

0.619

AKB63333.1

0.599

AKB63332.1

0.598

AKB66452.1

0.596

AKB66292.1

0.578

AKB63662.1

0.570

AKB65776.1

0.570

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63330.1	AKB63332.1	MSMAS_0134	MSMAS_0136	Glucose-1-phosphate thymidylyltransferase.	dTDP-glucose 4,6-dehydratase.	0.999
AKB63330.1	AKB63333.1	MSMAS_0134	MSMAS_0137	Glucose-1-phosphate thymidylyltransferase.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.987
AKB63330.1	AKB63368.1	MSMAS_0134	MSMAS_0172	Glucose-1-phosphate thymidylyltransferase.	UDP-glucose 6-dehydrogenase.	0.987
AKB63330.1	AKB63470.1	MSMAS_0134	MSMAS_0274	Glucose-1-phosphate thymidylyltransferase.	Glycosyltransferase, putative.	0.482
AKB63330.1	AKB63662.1	MSMAS_0134	MSMAS_0466	Glucose-1-phosphate thymidylyltransferase.	Dolichol-P-glucose synthetase.	0.472
AKB63330.1	AKB63849.1	MSMAS_0134	MSMAS_0653	Glucose-1-phosphate thymidylyltransferase.	Mannose-1-phosphate guanylyltransferase (GDP); Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.981
AKB63330.1	AKB63850.1	MSMAS_0134	MSMAS_0654	Glucose-1-phosphate thymidylyltransferase.	Hypothetical protein.	0.702
AKB63330.1	AKB65776.1	MSMAS_0134	MSMAS_2580	Glucose-1-phosphate thymidylyltransferase.	Hypothetical protein.	0.575
AKB63332.1	AKB63330.1	MSMAS_0136	MSMAS_0134	dTDP-glucose 4,6-dehydratase.	Glucose-1-phosphate thymidylyltransferase.	0.999
AKB63332.1	AKB63333.1	MSMAS_0136	MSMAS_0137	dTDP-glucose 4,6-dehydratase.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.999
AKB63332.1	AKB63368.1	MSMAS_0136	MSMAS_0172	dTDP-glucose 4,6-dehydratase.	UDP-glucose 6-dehydrogenase.	0.932
AKB63332.1	AKB63849.1	MSMAS_0136	MSMAS_0653	dTDP-glucose 4,6-dehydratase.	Mannose-1-phosphate guanylyltransferase (GDP); Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.419
AKB63332.1	AKB63850.1	MSMAS_0136	MSMAS_0654	dTDP-glucose 4,6-dehydratase.	Hypothetical protein.	0.598
AKB63333.1	AKB63330.1	MSMAS_0137	MSMAS_0134	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Glucose-1-phosphate thymidylyltransferase.	0.987
AKB63333.1	AKB63332.1	MSMAS_0137	MSMAS_0136	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	dTDP-glucose 4,6-dehydratase.	0.999
AKB63333.1	AKB63368.1	MSMAS_0137	MSMAS_0172	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	UDP-glucose 6-dehydrogenase.	0.941
AKB63333.1	AKB63849.1	MSMAS_0137	MSMAS_0653	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Mannose-1-phosphate guanylyltransferase (GDP); Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.643
AKB63333.1	AKB63850.1	MSMAS_0137	MSMAS_0654	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Hypothetical protein.	0.599
AKB63368.1	AKB63330.1	MSMAS_0172	MSMAS_0134	UDP-glucose 6-dehydrogenase.	Glucose-1-phosphate thymidylyltransferase.	0.987
AKB63368.1	AKB63332.1	MSMAS_0172	MSMAS_0136	UDP-glucose 6-dehydrogenase.	dTDP-glucose 4,6-dehydratase.	0.932