STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB63892.1Hypothetical protein. (345 aa)    
Predicted Functional Partners:
AKB63890.1
Hypothetical protein.
 
     0.883
AKB63891.1
Long-chain-fatty-acid--CoA ligase.
 
   
 0.854
AKB65409.1
NADH-quinone oxidoreductase subunit C/D.
  
 
 0.773
AKB65410.1
NADH-quinone oxidoreductase subunit C/D.
  
 
 0.773
AKB63330.1
Glucose-1-phosphate thymidylyltransferase.
  
 
 0.748
AKB65902.1
Histone acetyltransferase, ELP3 family.
   
 
 0.613
AKB66331.1
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
  
 
 0.590
argH
Argininosuccinate lyase.
    
 0.556
AKB63893.1
NAD synthetase.
 
     0.536
rpl2
LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
     
 0.533
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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