Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63918.1Hypothetical protein. (364 aa)    
Predicted Functional Partners:
AKB65859.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
 
 0.718
AKB65152.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
 
 0.717
AKB63330.1
Glucose-1-phosphate thymidylyltransferase.
 
 0.671
AKB63639.1
Alpha-amylase.
 
  
 0.670
AKB63640.1
Alpha-amylase.
 
  
 0.619
AKB64769.1
Glycogen phosphorylase.
 
 
 0.528
AKB64341.1
Hypothetical protein.
 
 0.511
AKB64846.1
Glycogen debranching enzyme.
 
 0.510
AKB63327.1
Glycosyltransferase.
  
     0.494
AKB64120.1
Mannose-1-phosphate guanylyltransferase.
 
 0.491
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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